scMMDB

Single-Cell Multimodal Omics DataBase (scMMDB) is a comprehensive repository for general paired single-cell multimodal omics data, encompassing both epigenomics, transcriptomics and proteomics data, and provides dataset/element search, visualization and download with unified formats.

Overview

154 DATASETS

37 TISSUES

8 SOURCES

28 DISEASES

4 SPECIES

14 BIOTECHNOLOGIES

4,703,420 CELLS (RAW)

4,607,619 CELLS (QC)

Multimodal Omics

Bimodal Omics

ATAC-RNA

60 Datasets

640,192 Cells

Bimodal Omics

ATAC-PROTEIN

19 Datasets

156,579 Cells

Bimodal Omics

RNA-PROTEIN

61 Datasets

3,692,124 Cells

Trimodal Omics

ATAC-RNA-PROTEIN

14 Datasets

118,724 Cells

Common Species

Homo sapiens

113 Datasets

3,985,909 Cells

Mus musculus

39 Datasets

586,042 Cells

Macaca mulatta

1 Datasets

13,761 Cells

Sus scrofa

1 Datasets

21,907 Cells

Biology Elements

Promoter

19,045 Elements

Gene

19,045 Elements

Protein

20,423 Elements

News

2024/06/01: scMMDB version 1.0 was online. A total of 154 single-cell multimodal omics datasets across 14 biotechnologies and 4 species were analyzed and include.

Citation

Jiawei Li, Mengyuan Zhao, Jiahui Yan, Yanlin Jiang, Zongbo Han, Shizhan Chen, Wei Li, Limin Jiang, Louxin Zhang, Fang Wang, Jijun Tang, Fei Guo, scMMDB: a comprehensive resource and knowledgebase for multimodal omics data at the single-cell resolution, 2024

scMMDB is developed by TJU, CSU, SIAT and HIT. For help, please refer to the manual link in the navigation bar, or contact us via ljwstruggle@gmail.com (Jiawei Li).